segName='   A'
seq="""
SER GLU SER GLU LEU ASP GLN GLU SER ASP 
ASP SER PHE PHE ASN GLU SER GLU SER GLU 
SER GLU ALA ASP VAL ASP SER ASP ASP SER 
ASP ALA LYS PRO TYR GLY PRO ASP TRP PHE 
LYS LYS SER GLU PHE ARG LYS GLN GLY GLY 
GLY SER ASN LYS PHE LEU LYS SER SER ASN 
TYR ASP SER SER ASP GLU GLU SER ASP GLU 
GLU ASP GLY LYS LYS VAL VAL LYS SER ALA 
LYS GLU LYS LEU LEU ASP GLU MET GLN ASP 
VAL TYR ASN LYS ILE SER GLN ALA GLU ASN 
SER ASP ASP TRP LEU THR ILE SER ASN GLU 
PHE ASP LEU ILE SER ARG LEU LEU VAL ARG 
ALA GLN GLN GLN ASN TRP GLY THR
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
