segName='   B'
seq="""
GLY SER MET ALA THR SER SER GLU GLU VAL 
LEU LEU ILE VAL LYS LYS VAL ARG GLN LYS 
LYS GLN ASP GLY ALA LEU TYR LEU MET ALA 
GLU ARG ILE ALA TRP ALA PRO GLU GLY LYS 
ASP ARG PHE THR ILE SER HIS MET TYR ALA 
ASP ILE LYS CYS GLN LYS ILE SER PRO GLU 
GLY LYS ALA LYS ILE GLN LEU GLN LEU VAL 
LEU HIS ALA GLY ASP THR THR ASN PHE HIS 
PHE SER ASN GLU SER THR ALA VAL LYS GLU 
ARG ASP ALA VAL LYS ASP LEU LEU GLN GLN 
LEU LEU PRO LYS PHE LYS ARG LYS ALA ASN 
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
