segName='   A'
seq="""
GLY GLY SER MET MET MET ALA LEU SER LYS 
THR PHE GLY GLN LYS PRO VAL LYS PHE GLN 
LEU GLU ASP ASP GLY GLU PHE TYR MET ILE 
GLY SER GLU VAL GLY ASN TYR LEU ARG MET 
PHE ARG GLY SER LEU TYR LYS ARG TYR PRO 
SER LEU TRP ARG ARG LEU ALA THR VAL GLU 
GLU ARG LYS LYS ILE VAL ALA SER SER HIS 
GLY LYS LYS THR LYS PRO ASN THR LYS ASP 
HIS GLY TYR THR THR LEU ALA THR SER VAL 
THR LEU LEU LYS ALA SER GLU VAL GLU GLU 
ILE LEU ASP GLY ASN ASP GLU LYS TYR LYS 
ALA VAL SER ILE SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
