segName='   A'
seq="""
ALA GLY HIS MET GLU ILE ASP LYS ASN VAL 
GLY ALA ASP LEU ILE SER ASN THR ARG ARG 
ILE LEU ARG LEU ASP GLU ASN GLU LEU ARG 
ILE THR ASP THR ALA LEU ILE CYS LYS ASN 
PRO ASN TYR SER LEU CYS ASP ALA MET LEU 
THR THR ASP ILE VAL TYR PRO VAL GLU TYR 
LEU LEU SER TYR TRP GLU CYS ARG SER GLY 
ARG THR ALA CYS PHE VAL PHE LYS ASN THR 
GLY CYS ARG VAL SER LEU SER CYS TYR ILE 
GLY PHE PRO GLU ARG LEU LYS ASP LEU LYS 
ARG VAL CYS ASP PHE ASN PHE LEU SER VAL 
ASN GLU ALA LEU VAL VAL THR LEU ALA ASP 
ILE GLU ARG ILE LYS PRO CYS ASP LYS GLY 
VAL LEU THR ASN CYS VAL VAL ARG LYS SER 
ASN SER GLY MET SER TYR ASN ILE GLU VAL 
VAL ALA PHE GLY PRO ASP ASN GLU ALA GLU 
TYR GLN ALA LEU LEU ARG ASP ILE TYR ALA 
ARG
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
