segName='   A'
seq="""
GLY ALA MET GLY ASN GLU TYR LYS ASP ASN 
ALA TYR ILE TYR ILE GLY ASN LEU ASN ARG 
GLU LEU THR GLU GLY ASP ILE LEU THR VAL 
PHE SER GLU TYR GLY VAL PRO VAL ASP VAL 
ILE LEU SER ARG ASP GLU ASN THR GLY GLU 
SER GLN GLY PHE ALA TYR LEU LYS TYR GLU 
ASP GLN ARG SER THR ILE LEU ALA VAL ASP 
ASN LEU ASN GLY PHE LYS ILE GLY GLY ARG 
ALA LEU LYS ILE ASP HIS THR PHE TYR ARG 
PRO LYS ARG
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
