segName='   B'
seq="""
GLY ALA MET GLY ASN ARG PHE ALA ILE MET 
PRO GLY SER ARG TRP ASP GLY VAL HIS ARG 
SER ASN GLY PHE GLU GLU LYS TRP PHE ALA 
LYS GLN ASN GLU ILE ASN GLU LYS LYS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
