segName='   A'
seq="""
ASP ASP ASP ASP ASP VAL SER PHE CYS ALA 
SER VAL GLN LEU HIS THR ALA VAL GLU MET 
HIS HIS TRP CYS ILE PRO PHE SER VAL ASP 
GLY GLN PRO ALA PRO SER LEU ARG TRP LEU 
PHE ASN GLY SER VAL LEU ASN GLU THR SER 
PHE ILE PHE THR GLU PHE LEU GLU PRO ALA 
ALA ASN GLU THR VAL ARG HIS GLY CYS LEU 
ARG LEU ASN GLN PRO THR HIS VAL ASN ASN 
GLY ASN TYR THR LEU LEU ALA ALA ASN PRO 
CYS GLY GLN ALA SER ALA SER ILE MET ALA 
ALA PHE MET ASP ASN PRO PHE
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
