segName='   A'
seq="""
GLY ALA MET GLY SER ARG ASP THR MET PHE 
THR LYS ILE PHE VAL GLY GLY LEU PRO TYR 
HIS THR SER ASP LYS THR LEU HIS GLU TYR 
PHE GLU GLN PHE GLY ASP ILE GLU GLU ALA 
VAL VAL ILE THR ASP ARG ASN THR GLN LYS 
SER ARG GLY TYR GLY PHE VAL THR MET LYS 
ASP ARG ALA SER ALA GLU ARG ALA CYS LYS 
ASP PRO ASN PRO ILE ILE ASP GLY ARG LYS 
ALA ASN VAL ASN LEU ALA TYR LEU GLY ALA 
LYS PRO ARG THR ASN VAL GLN
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
