segName='   A'
seq="""
MET LYS HIS HIS HIS HIS HIS HIS PRO MET 
SER ASP TYR ASP ILE PRO THR THR GLU ASN 
LEU TYR PHE GLU GLY ALA MET GLY PHE THR 
GLY ARG LYS ILE SER LEU ASP PHE GLN ASP 
VAL GLU ILE ARG THR ILE LEU GLN ILE LEU 
ALA LYS GLU SER GLY MET ASN ILE VAL ALA 
SER ASP SER VAL ASN GLY LYS MET THR LEU 
SER LEU LYS ASP VAL PRO TRP ASP GLN ALA 
LEU ASP LEU VAL MET GLN ALA ARG ASN LEU 
ASP MET ARG GLN GLN GLY ASN ILE VAL ASN 
ILE ALA PRO ARG ASP GLU LEU LEU ALA LYS 
ASP LYS ALA PHE LEU GLN ALA GLU LYS ASP 
ILE ALA ASP LEU GLY ALA LEU TYR
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
