segName='   A'
seq="""
PHE ALA CYS LYS THR ALA ASN GLY THR ALA 
ILE PRO ILE GLY GLY GLY SER ALA ASN VAL 
TYR VAL ASN LEU ALA PRO VAL VAL ASN VAL 
GLY GLN ASN LEU VAL VAL ASP LEU SER THR 
GLN ILE PHE CYS HIS ASN ASP TYR PRO GLU 
THR ILE THR ASP TYR VAL THR LEU GLN ARG 
GLY SER ALA TYR GLY GLY VAL LEU SER ASN 
PHE SER GLY THR VAL LYS TYR SER GLY SER 
SER TYR PRO PHE PRO THR THR SER GLU THR 
PRO ARG VAL VAL TYR ASN SER ARG THR ASP 
LYS PRO TRP PRO VAL ALA LEU TYR LEU THR 
PRO VAL SER SER ALA GLY GLY VAL ALA ILE 
LYS ALA GLY SER LEU ILE ALA VAL LEU ILE 
LEU ARG GLN THR ASN ASN TYR ASN SER ASP 
ASP PHE GLN PHE VAL TRP ASN ILE TYR ALA 
ASN ASN ASP VAL VAL VAL PRO THR
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
