segName='   A'
seq="""
MET SER LEU SER HIS LEU THR LEU ASP GLN 
TYR TYR GLU ILE GLN CYS ASN GLU LEU GLU 
ALA ILE ARG SER ILE TYR MET ASP ASP PHE 
THR ASP LEU THR LYS ARG LYS SER SER TRP 
ASP LYS GLN PRO GLN ILE ILE PHE GLU ILE 
THR LEU ARG SER VAL ASP LYS GLU PRO VAL 
GLU SER SER ILE THR LEU HIS PHE ALA MET 
THR PRO MET TYR PRO TYR THR ALA PRO GLU 
ILE GLU PHE LYS ASN VAL GLN ASN VAL MET 
ASP SER GLN LEU GLN MET LEU LYS SER GLU 
PHE LYS LYS ILE HIS ASN THR SER ARG GLY 
GLN GLU ILE ILE PHE GLU ILE THR SER PHE 
THR GLN GLU LYS LEU ASP GLU PHE GLN ASN 
VAL VAL ASN THR GLN SER LEU GLU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
