segName='   A'
seq="""
GLY SER SER GLY SER SER GLY ILE ARG ARG 
PRO MET ASN ALA PHE MET VAL TRP ALA LYS 
ASP GLU ARG LYS ARG LEU ALA GLN GLN ASN 
PRO ASP LEU HIS ASN ALA GLU LEU SER LYS 
MET LEU GLY LYS SER TRP LYS ALA LEU THR 
LEU ALA GLU LYS ARG PRO PHE VAL GLU GLU 
ALA GLU ARG LEU ARG VAL GLN HIS MET GLN 
ASP HIS PRO ASN TYR LYS SER GLY PRO SER 
SER GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
