segName='   A'
seq="""
GLY SER SER GLY SER SER GLY THR GLY GLU 
LYS PRO PHE LYS CYS GLY GLU CYS GLY LYS 
SER TYR ASN GLN ARG VAL HIS LEU THR GLN 
HIS GLN ARG VAL HIS THR GLY GLU LYS PRO 
SER GLY PRO SER SER GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
