segName='   A'
seq="""
GLY SER SER GLY SER SER GLY LYS LYS PRO 
LEU VAL CYS ASN GLU CYS GLY LYS THR PHE 
ARG GLN SER SER CYS LEU SER LYS HIS GLN 
ARG ILE HIS SER GLY GLU LYS PRO SER GLY 
PRO SER SER GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
