segName='   A'
seq="""
GLY ALA MET ALA ARG ARG LEU TYR VAL GLY 
ASN ILE PRO PHE GLY ILE THR GLU GLU ALA 
MET MET ASP PHE PHE ASN ALA GLN MET ARG 
LEU GLY GLY LEU THR GLN ALA PRO GLY ASN 
PRO VAL LEU ALA VAL GLN ILE ASN GLN ASP 
LYS ASN PHE ALA PHE LEU GLU PHE ARG SER 
VAL ASP GLU THR THR GLN ALA MET ALA PHE 
ASP GLY ILE ILE PHE GLN GLY GLN SER LEU 
LYS ILE ARG ARG PRO HIS ASP TYR GLN PRO 
LEU PRO GLY MET SER GLU ASN PRO SER VAL 
TYR VAL PRO GLY VAL VAL SER THR VAL VAL 
PRO ASP SER ALA HIS LYS LEU PHE ILE GLY 
GLY LEU PRO ASN TYR LEU ASN ASP ASP GLN 
VAL LYS GLU LEU LEU THR SER PHE GLY PRO 
LEU LYS ALA PHE ASN LEU VAL LYS ASP SER 
ALA THR GLY LEU SER LYS GLY TYR ALA PHE 
CYS GLU TYR VAL ASP ILE ASN VAL THR ASP 
GLN ALA ILE ALA GLY LEU ASN GLY MET GLN 
LEU GLY ASP LYS LYS LEU LEU VAL GLN ARG 
ALA SER VAL GLY ALA LYS ASN ALA
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
