segName='   A'
seq="""
GLY GLY SER LEU LYS LYS ASN THR VAL ASP 
ASP ILE SER GLU SER LEU ARG GLN GLY GLY 
GLY LYS LEU ASN PHE ASP GLU LEU ARG GLN 
ASP LEU LYS GLY LYS GLY HIS THR ASP ALA 
GLU ILE GLU ALA ILE PHE THR LYS TYR ASP 
GLN ASP GLY ASP GLN GLU LEU THR GLU HIS 
GLU HIS GLN GLN MET ARG ASP ASP LEU GLU 
LYS GLU ARG GLU ASP LEU ASP LEU ASP
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
