segName='   A'
seq="""
GLY ALA MET ALA PRO PRO VAL ALA ALA PRO 
SER PRO ALA VAL THR TYR ALA LEU GLN GLU 
ASP VAL PHE ILE LYS CYS ASN ASP GLY ARG 
PHE TYR LEU GLY THR ILE ILE ASP GLN THR 
SER ASP GLN TYR LEU ILE ARG PHE ASP ASP 
GLN SER GLU GLN TRP CYS GLU PRO ASP LYS 
LEU ARG LYS LEU GLY GLY GLY SER SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
