segName='   A'
seq="""
HIS HIS HIS HIS HIS HIS ASN LEU ALA LEU 
ASN LYS THR ALA THR ALA SER SER ILE GLU 
GLY ALA GLY PHE GLU ALA SER ARG ALA PHE 
ASP GLY SER SER THR THR ARG TRP ALA SER 
ALA GLU GLY VAL ASP PRO GLN TRP ILE TYR 
VAL ASN LEU GLY SER SER GLN THR VAL ASN 
ARG VAL LYS LEU ASN TRP GLU ALA ALA TYR 
ALA SER SER TYR THR ILE GLN VAL SER ASN 
ASP SER GLY THR PRO THR ASN TRP THR THR 
VAL TYR THR THR THR THR GLY ASP GLY GLY 
ILE ASP ASP ILE THR PHE THR ALA ARG THR 
ALA LYS TYR VAL ARG VAL HIS GLY THR VAL 
ARG GLY THR PRO TYR GLY TYR SER LEU TRP 
GLU PHE GLU VAL TYR GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
