segName='   A'
seq="""
GLY SER SER GLY SER SER GLY LYS ILE PHE 
THR CYS GLU TYR CYS ASN LYS VAL PHE LYS 
PHE LYS HIS SER LEU GLN ALA HIS LEU ARG 
ILE HIS THR ASN GLU LYS PRO TYR LYS CYS 
PRO GLN CYS SER TYR ALA SER ALA ILE LYS 
ALA ASN LEU ASN VAL HIS LEU ARG LYS HIS 
THR GLY GLU LYS PHE ALA CYS ASP TYR CYS 
SER PHE THR CYS LEU SER LYS GLY HIS LEU 
LYS VAL HIS ILE GLU ARG VAL HIS LYS LYS 
ILE LYS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
