segName='   A'
seq="""
GLY SER HIS MET GLU PRO ALA ARG VAL ARG 
CYS SER HIS LEU LEU VAL LYS HIS SER GLN 
SER ARG ARG PRO SER SER TRP ARG GLN GLU 
LYS ILE THR ARG THR LYS GLU GLU ALA LEU 
GLU LEU ILE ASN GLY TYR ILE GLN LYS ILE 
LYS SER GLY GLU GLU ASP PHE GLU SER LEU 
ALA SER GLN PHE SER ASP SER SER SER ALA 
LYS ALA ARG GLY ASP LEU GLY ALA PHE SER 
ARG GLY GLN MET GLN LYS PRO PHE GLU ASP 
ALA SER PHE ALA LEU ARG THR GLY GLU MET 
SER GLY PRO VAL PHE THR ASP SER GLY ILE 
HIS ILE ILE LEU ARG THR GLU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
