segName='   A'
seq="""
GLY PRO LEU GLY SER GLU GLY PRO VAL THR 
VAL VAL VAL ALA LYS ASN TYR ASN GLU ILE 
VAL LEU ASP ASP THR LYS ASP VAL LEU ILE 
GLU PHE TYR ALA PRO TRP CYS GLY HIS CYS 
LYS ALA LEU ALA PRO LYS TYR GLU GLU LEU 
GLY ALA LEU TYR ALA LYS SER GLU PHE LYS 
ASP ARG VAL VAL ILE ALA LYS VAL ASP ALA 
THR ALA ASN ASP VAL PRO ASP GLU ILE GLN 
GLY PHE PRO THR ILE LYS LEU TYR PRO ALA 
GLY ALA LYS GLY GLN PRO VAL THR TYR SER 
GLY SER ARG THR VAL GLU ASP LEU ILE LYS 
PHE ILE ALA GLU ASN GLY LYS TYR LYS ALA 
ALA
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
