segName='   A'
seq="""
MET GLY LYS GLU PRO PRO TYR VAL SER SER 
LEU ARG ILE GLU ILE PRO ALA ASP ILE ALA 
ALA ASN GLU ALA LEU LYS VAL ARG LEU LEU 
GLU THR GLU GLY VAL LYS GLU VAL LEU ILE 
ALA GLU GLU GLU HIS SER ALA TYR VAL LYS 
ILE ASP SER LYS VAL THR ASN ARG PHE GLU 
VAL GLU GLN ALA ILE ARG GLN ALA LEU GLU 
HIS HIS HIS HIS HIS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
