segName='   A'
seq="""
VAL ASP MET VAL GLN LEU LEU LYS LYS TYR 
PRO ILE VAL TRP GLN GLY LEU LEU ALA LEU 
LYS ASN ASP THR ALA ALA VAL GLN LEU HIS 
PHE VAL SER GLY ASN ASN VAL LEU ALA HIS 
ARG SER LEU PRO LEU SER GLU GLY GLY PRO 
PRO LEU ARG ILE ALA GLN ARG MET ARG LEU 
GLU ALA THR GLN LEU GLU GLY VAL ALA ARG 
ARG MET THR VAL GLU THR ASP TYR CYS LEU 
LEU LEU ALA LEU PRO CYS GLY ARG ASP GLN 
GLU ASP VAL VAL SER GLN THR GLU SER LEU 
LYS ALA ALA PHE ILE THR TYR LEU GLN ALA 
LYS GLN ALA ALA GLY ILE ILE ASN VAL PRO 
ASN PRO GLY SER ASN GLN PRO ALA TYR VAL 
LEU GLN ILE PHE PRO PRO CYS GLU PHE SER 
GLU SER HIS LEU SER ARG LEU ALA PRO ASP 
LEU LEU ALA SER ILE SER ASN ILE SER PRO 
HIS LEU MET ILE VAL ILE ALA SER VAL
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
