segName='   A'
seq="""
VAL GLU ARG CYS GLY VAL LEU SER LYS TRP 
THR ASN TYR ILE HIS GLY TRP GLN ASP ARG 
TRP VAL VAL LEU LYS ASN ASN ALA LEU SER 
TYR TYR LYS SER GLU ASP GLU THR GLU TYR 
GLY CYS ARG GLY SER ILE CYS LEU SER LYS 
ALA VAL ILE THR PRO HIS ASP PHE ASP GLU 
CYS ARG PHE ASP ILE SER VAL ASN ASP SER 
VAL TRP TYR LEU ARG ALA GLN ASP PRO ASP 
HIS ARG GLN GLN TRP ILE ASP ALA ILE GLU 
GLN HIS LYS THR
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
