segName='   A'
seq="""
MET VAL GLY PHE ASN TYR SER ILE ASP PHE 
THR GLY GLY THR ALA TYR THR LEU ARG ALA 
GLU PRO ASN VAL GLU VAL GLU THR LEU ARG 
ARG PHE LEU GLU GLU LYS GLY PHE PRO GLY 
LYS GLU ALA VAL ILE THR GLN VAL GLN ALA 
PRO THR ALA ALA TYR ARG GLU PHE LEU VAL 
LYS LEU PRO PRO LEU SER ASP GLU ARG ARG 
LEU GLU LEU GLU ARG LEU PHE ALA SER GLU 
LEU LYS ALA THR VAL LEU ALA SER GLU THR 
VAL GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
