segName='   A'
seq="""
GLY SER SER GLY SER SER GLY ARG LEU PRO 
VAL ASN PHE PHE LYS PHE GLN PHE ARG ASN 
VAL GLU TYR SER SER GLY ARG ASN LYS THR 
PHE LEU CYS TYR VAL VAL GLU VAL GLN SER 
LYS GLY GLY GLN ALA GLN ALA THR GLN GLY 
TYR LEU GLU ASP GLU HIS ALA GLY ALA HIS 
ALA GLU GLU ALA PHE PHE ASN THR ILE LEU 
PRO ALA PHE ASP PRO ALA LEU LYS TYR ASN 
VAL THR TRP TYR VAL SER SER SER PRO CYS 
ALA ALA CYS ALA ASP ARG ILE LEU LYS THR 
LEU SER LYS THR LYS ASN LEU ARG LEU LEU 
ILE LEU VAL SER ARG LEU PHE MET TRP GLU 
GLU PRO GLU VAL GLN ALA ALA LEU LYS LYS 
LEU LYS GLU ALA GLY CYS LYS LEU ARG ILE 
MET LYS PRO GLN ASP PHE GLU TYR ILE TRP 
GLN ASN PHE VAL GLU GLN GLU GLU GLY GLU 
SER LYS ALA PHE GLU PRO TRP GLU ASP ILE 
GLN GLU ASN PHE LEU TYR TYR GLU GLU LYS 
LEU ALA ASP ILE LEU LYS SER GLY PRO SER 
SER GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
