segName='   A'
seq="""
ASN PRO LEU ILE PRO ALA ILE TYR ILE GLY 
ALA THR VAL GLY PRO SER VAL TRP ALA TYR 
LEU VAL ALA LEU VAL GLY ALA ALA ALA VAL 
THR ALA ALA ASN ILE ARG ARG ALA SER SER 
ASP ASN HIS SER CYS ALA GLY ASN ARG GLY 
TRP CYS ARG SER LYS CYS PHE ARG HIS GLU 
TYR VAL ASP THR TYR TYR SER ALA VAL CYS 
GLY ARG TYR PHE CYS CYS ARG SER ARG
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
