segName='   A'
seq="""
GLY SER PHE THR MET PRO GLY LEU VAL ASP 
SER ASN PRO ALA PRO PRO GLU SER GLN GLU 
LYS LYS PRO LEU LYS PRO CYS CYS ALA CYS 
PRO GLU THR LYS LYS ALA ARG ASP ALA CYS 
ILE ILE GLU LYS GLY GLU GLU HIS CYS GLY 
HIS LEU ILE GLU ALA HIS LYS GLU CYS MET 
ARG ALA LEU GLY PHE LYS ILE
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
