segName='   A'
seq="""
GLY SER HIS MET ALA SER SER CYS ALA VAL 
GLN VAL LYS LEU GLU LEU GLY HIS ARG ALA 
GLN VAL ARG LYS LYS PRO THR VAL GLU GLY 
PHE THR HIS ASP TRP MET VAL PHE VAL ARG 
GLY PRO GLU HIS SER ASN ILE GLN HIS PHE 
VAL GLU LYS VAL VAL PHE HIS LEU HIS GLU 
SER PHE PRO ARG PRO LYS ARG VAL CYS LYS 
ASP PRO PRO TYR LYS VAL GLU GLU SER GLY 
TYR ALA GLY PHE ILE LEU PRO ILE GLU VAL 
TYR PHE LYS ASN LYS GLU GLU PRO ARG LYS 
VAL ARG PHE ASP TYR ASP LEU PHE LEU HIS 
LEU GLU GLY HIS PRO PRO VAL ASN HIS LEU 
ARG CYS GLU LYS LEU THR PHE ASN ASN PRO 
THR GLU ASP PHE ARG ARG LYS LEU LEU LYS 
ALA
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
