segName='   A'
seq="""
SER GLU GLU GLU ASP LYS CYS LYS PRO MET 
SER TYR GLU GLU LYS ARG GLN LEU SER LEU 
ASP ILE ASN LYS LEU PRO GLY GLU LYS LEU 
GLY ARG VAL VAL HIS ILE ILE GLN SER ARG 
GLU PRO SER LEU LYS ASN SER ASN PRO ASP 
GLU ILE GLU ILE ASP PHE GLU THR LEU LYS 
PRO SER THR LEU ARG GLU LEU GLU ARG TYR 
VAL THR SER CYS LEU ARG LYS LYS ARG LYS 
PRO GLN ALA
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
