segName='   A'
seq="""
SER SER LYS PRO LYS TYR ASN PRO GLU VAL 
GLU ALA LYS LEU ASP VAL ALA ARG ARG LEU 
PHE LYS ARG TYR ASP LYS ASP GLY SER GLY 
GLN LEU GLN ASP ASP GLU ILE ALA GLY LEU 
LEU LYS ASP THR TYR ALA GLU MET GLY MET 
SER ASN PHE THR PRO THR LYS GLU ASP VAL 
LYS ILE TRP LEU GLN MET ALA ASP THR ASN 
SER ASP GLY SER VAL SER LEU GLU GLU TYR 
GLU ASP LEU ILE ILE LYS SER LEU GLN LYS 
ALA GLY ILE ARG VAL GLU LYS GLN SER LEU 
VAL PHE
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
