segName='   A'
seq="""
GLU ASN LYS LYS GLN ALA LEU LYS GLU LYS 
GLU LEU GLY ASN ASP ALA TYR LYS LYS LYS 
ASP PHE ASP THR ALA LEU LYS HIS TYR ASP 
LYS ALA LYS GLU LEU ASP PRO THR ASN MET 
THR TYR ILE THR ASN GLN ALA ALA VAL TYR 
PHE GLU LYS GLY ASP TYR ASN LYS CYS ARG 
GLU LEU CYS GLU LYS ALA ILE GLU VAL GLY 
ARG GLU ASN ARG GLU ASP TYR ARG GLN ILE 
ALA LYS ALA TYR ALA ARG ILE GLY ASN SER 
TYR PHE LYS GLU GLU LYS TYR LYS ASP ALA 
ILE HIS PHE TYR ASN LYS SER LEU ALA GLU 
HIS ARG THR PRO ASP VAL LEU LYS LYS CYS 
GLN GLN ALA GLU LYS ILE LEU LYS GLU GLN 
GLU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
