segName='   B'
seq="""
ALA PRO ALA GLU PRO LYS ILE ILE LYS VAL 
THR VAL LYS THR PRO LYS GLU LYS GLU GLU 
PHE ALA VAL PRO GLU ASN SER SER VAL GLN 
GLN PHE LYS GLU ALA ILE SER LYS ARG PHE 
LYS SER GLN THR ASP GLN LEU VAL LEU ILE 
PHE ALA GLY LYS ILE LEU LYS ASP GLN ASP 
THR LEU ILE GLN HIS GLY ILE HIS ASP GLY 
LEU THR VAL HIS LEU VAL ILE LYS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
