segName='   A'
seq="""
MET THR THR SER GLY ALA LEU PHE PRO SER 
LEU VAL PRO GLY SER ARG GLY ALA SER ASN 
LYS TYR LEU VAL GLU PHE ARG ALA GLY LYS 
MET SER LEU LYS GLY THR THR VAL THR PRO 
ASP LYS ARG LYS GLY LEU VAL TYR ILE GLN 
GLN THR ASP ASP SER LEU ILE HIS PHE CYS 
TRP LYS ASP ARG THR SER GLY ASN VAL GLU 
ASP ASP LEU ILE ILE PHE PRO ASP ASP CYS 
GLU PHE LYS ARG VAL PRO GLN CYS PRO SER 
GLY ARG VAL TYR VAL LEU LYS PHE LYS ALA 
GLY SER LYS ARG LEU PHE PHE TRP MET GLN 
GLU PRO LYS THR ASP GLN ASP GLU GLU HIS 
CYS ARG LYS VAL ASN GLU TYR LEU ASN ASN 
PRO PRO MET PRO GLY ALA LEU GLY ALA SER 
GLY SER SER GLY HIS GLU LEU SER ALA LEU 
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
