segName='   A'
seq="""
TYR CYS GLN LYS TRP MET TRP THR CYS ASP 
SER GLU ARG LYS CYS CYS GLU GLY MET VAL 
CYS ARG LEU TRP CYS LYS LYS LYS LEU TRP 
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
