segName='   A'
seq="""
GLY ALA MET GLY PRO SER SER VAL SER GLY 
ALA ALA PRO PHE SER SER PHE MET PRO PRO 
GLU GLN GLU THR VAL HIS VAL PHE ILE PRO 
ALA GLN ALA VAL GLY ALA ILE ILE GLY ASP 
ASP GLY GLN HIS ILE LYS GLN LEU SER ARG 
PHE ALA SER ALA SER ILE LYS ILE ALA PRO 
PRO GLU THR PRO ASP SER LYS VAL ARG MET 
VAL VAL ILE THR GLY PRO PRO GLU ALA GLN 
PHE LYS ALA GLN GLY ARG ILE TYR GLY LYS 
LEU LYS GLU GLU ASN PHE PHE GLY PRO LYS 
GLU GLU VAL LYS LEU GLU THR HIS ILE ARG 
VAL PRO ALA SER ALA ALA GLY ARG VAL ILE 
GLY LYS GLY GLY LYS THR VAL ASN GLU LEU 
GLN ASN LEU THR ALA ALA GLU VAL VAL VAL 
PRO ARG ASP GLN THR PRO ASP GLU ASN GLU 
GLN VAL ILE VAL LYS ILE ILE GLY HIS PHE 
TYR ALA SER GLN MET ALA GLN ARG LYS ILE 
ARG ASP ILE LEU ALA GLN VAL LYS GLN GLN 
HIS GLN LYS GLY GLN SER GLY GLN LEU GLN 
ALA
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
