segName='   A'
seq="""
GLY ILE ALA GLN GLN TRP ILE GLN SER LYS 
ARG GLU ASP ILE VAL ASN GLN MET THR GLU 
ALA CYS LEU ASN GLN SER LEU ASP ALA LEU 
LEU SER ARG ASP LEU ILE MET LYS GLU ASP 
TYR GLU LEU VAL SER THR LYS PRO THR ARG 
THR SER LYS VAL ARG GLN LEU LEU ASP THR 
THR ASP ILE GLN GLY GLU GLU PHE ALA LYS 
VAL ILE VAL GLN LYS LEU LYS ASP ASN LYS 
GLN MET GLY LEU GLN PRO TYR PRO GLU ILE 
LEU VAL VAL SER ARG SER PRO SER LEU ASN 
LEU LEU GLN ASN LYS SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
