segName='   A'
seq="""
PRO LEU THR ARG PRO TYR LEU GLY PHE ARG 
VAL ALA VAL GLY ARG ASP SER SER GLY CYS 
THR THR LEU SER ILE GLN GLU VAL THR GLN 
THR TYR THR GLY SER ASN GLY GLY ALA ASP 
LEU MET GLY PRO ALA PHE ALA ALA GLY LEU 
ARG VAL GLY ASP GLN LEU VAL ARG PHE ALA 
GLY TYR THR VAL THR GLU LEU ALA ALA PHE 
ASN THR VAL VAL ALA ARG HIS VAL ARG PRO 
SER ALA SER ILE PRO VAL VAL PHE SER ARG 
ASP GLY VAL VAL MET SER ALA THR ILE VAL 
VAL GLY GLU LEU GLU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
