segName='   A'
seq="""
MET GLN TYR LYS LEU VAL ILE ASN GLY LYS 
THR LEU LYS GLY GLU THR THR THR LYS ALA 
VAL ASP ALA GLU THR ALA GLU LYS ALA PHE 
LYS GLN TYR ALA ASN ASP ASN GLY VAL ASP 
GLY VAL TRP THR TYR ASP ASP ALA THR LYS 
THR PHE THR VAL THR GLU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
