segName='   A'
seq="""
SER GLU HIS ARG LYS GLN PRO CYS PRO TYR 
GLY LYS LYS CYS THR TYR GLY ILE LYS CYS 
ARG PHE PHE HIS PRO GLU ARG PRO SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
