segName='   J'
seq="""
HOH HOH HOH HOH HOH HOH HOH HOH HOH HOH 
HOH HOH HOH HOH HOH HOH HOH HOH HOH HOH 
HOH HOH HOH HOH HOH HOH HOH HOH HOH HOH 
HOH HOH HOH HOH HOH HOH HOH HOH HOH HOH 
HOH HOH HOH HOH HOH HOH HOH HOH
"""
patch_list=[]
seqType='NON-POLYMER'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
