segName='   A'
seq="""
CYS PRO GLY GLU GLY GLU GLU CYS ASP VAL 
GLU PHE ASN PRO CYS CYS PRO PRO LEU THR 
CYS ILE PRO GLY ASP PRO TYR GLY ILE CYS 
TYR ILE ILE
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
