segName='   A'
seq="""
SER ASP VAL PHE GLU PHE GLU PHE SER GLU 
THR PRO LEU LEU PRO SER TYR ASN ILE GLN 
VAL SER VAL ALA GLN GLY PRO ARG ASN TRP 
LEU LEU LEU SER ASP VAL LEU LYS LYS LEU 
LYS MET SER SER ARG ILE PHE ARG SER ASN 
PHE PRO ASN VAL GLU ILE VAL THR ILE ALA 
GLU ALA GLU PHE TYR ARG GLN VAL SER ALA 
SER LEU LEU PHE SER SER SER LYS ASP LEU 
GLU ALA PHE ASN PRO GLU SER LYS GLU LEU 
LEU ASP LEU VAL GLU PHE THR ASN GLU ILE 
GLN THR LEU LEU GLY SER SER VAL GLU TRP 
LEU HIS PRO SER ASP
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
