segName='   A'
seq="""
TYR ARG ALA ILE LYS GLY MET GLU THR LYS 
ARG GLU ILE GLY GLY TYR THR TYR LYS VAL 
VAL PHE TYR GLU ASN VAL PHE GLN ASP SER 
ILE LEU LEU GLY ASN PHE ALA SER GLN GLU 
GLY ASN VAL LEU LYS TYR GLU ASN GLY GLN 
SER CYS ALA ASN GLY PRO HIS ARG SER ALA 
ILE VAL THR VAL GLU CYS GLY VAL GLU ASN 
GLU ILE VAL SER VAL LEU GLU ALA GLN LYS 
CYS GLU TYR LEU ILE LYS MET LYS SER PRO 
ALA ALA CYS SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
