segName='   A'
seq="""
MET GLY HIS HIS HIS HIS HIS HIS SER HIS 
MET GLN LEU ALA SER TRP SER ASP PRO THR 
GLU GLU THR GLY PRO VAL ALA GLY ILE LEU 
ASP THR GLU THR LEU GLU LYS VAL SER ILE 
THR GLU ALA MET HIS ARG ASN LEU VAL ASP 
ASN ILE THR GLY GLN ARG LEU LEU GLU ALA 
GLN ALA CYS THR GLY GLY ILE ILE ASP PRO 
SER THR GLY GLU ARG PHE PRO VAL THR ASP 
ALA VAL ASN LYS GLY LEU VAL ASP LYS ILE 
MET VAL ASP ARG ILE ASN LEU ALA GLN LYS 
ALA PHE CYS GLY PHE GLU ASP PRO ARG THR 
LYS THR LYS MET SER ALA ALA GLN ALA LEU 
LYS LYS GLY TRP LEU TYR TYR GLU ALA GLY 
GLN ARG PHE LEU GLU VAL GLN TYR LEU THR 
GLY GLY LEU ILE GLU PRO ASP THR PRO GLY 
ARG VAL PRO LEU ASP GLU ALA LEU GLN ARG 
GLY THR VAL ASP ALA ARG THR ALA GLN LYS 
LEU ARG ASP VAL GLY ALA TYR SER LYS TYR 
LEU THR CYS PRO LYS THR LYS LEU LYS ILE 
SER TYR LYS ASP ALA LEU ASP ARG SER MET 
VAL GLU GLU GLY THR GLY LEU ARG LEU LEU 
GLU ALA ALA ALA GLN
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
