segName='   B'
seq="""
GLY PRO GLY SER MET VAL ASP VAL ILE ILE 
TYR THR ARG PRO GLY CYS PRO TYR CYS ALA 
ARG ALA LYS ALA LEU LEU ALA ARG LYS GLY 
ALA GLU PHE ASN GLU ILE ASP ALA SER ALA 
THR PRO GLU LEU ARG ALA GLU MET GLN GLU 
ARG SER GLY ARG ASN THR PHE PRO GLN ILE 
PHE ILE GLY SER VAL HIS VAL GLY GLY SER 
ASP ASP LEU TYR ALA LEU GLU ASP GLU GLY 
LYS LEU ASP SER LEU LEU LYS THR GLY LYS 
LEU ILE
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
