segName='   A'
seq="""
HIS HIS HIS HIS HIS HIS SER SER GLY THR 
GLY SER GLY GLU ASN LEU TYR PHE GLN GLY 
HIS MET THR LEU PRO SER GLY HIS PRO LYS 
SER ARG LEU ILE LYS LYS PHE THR ALA LEU 
GLY PRO TYR ILE ARG GLU GLY GLN CYS GLU 
ASP ASN ARG PHE PHE PHE ASP CYS LEU ALA 
VAL CYS VAL ASN VAL LYS PRO ALA PRO GLU 
LYS ARG GLU PHE TRP GLY TRP TRP MET GLU 
LEU GLU ALA GLN GLU LYS ARG PHE THR TYR 
ARG TYR GLN PHE GLY LEU PHE ASP LYS GLU 
GLY ASN TRP THR VAL VAL PRO ILE ASN GLU 
THR GLU VAL VAL GLU ARG LEU GLU TYR THR 
LEU ARG GLU PHE HIS GLU LYS LEU ARG ASP 
LEU LEU ILE SER MET GLU LEU ALA LEU GLU 
PRO SER ASP ASP PHE ASN ASP GLU PRO VAL 
LYS LEU SER ALA
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
