segName='   A'
seq="""
GLY SER HIS MET LYS LYS VAL MET PHE VAL 
CYS LYS ARG ASN SER CYS ARG SER GLN MET 
ALA GLU GLY PHE ALA LYS THR LEU GLY ALA 
GLY LYS ILE ALA VAL THR SER CYS GLY LEU 
GLU SER SER ARG VAL HIS PRO THR ALA ILE 
ALA MET MET GLU GLU VAL GLY ILE ASP ILE 
SER GLY GLN THR SER ASP PRO ILE GLU ASN 
PHE ASN ALA ASP ASP TYR ASP VAL VAL ILE 
SER LEU CYS GLY CYS GLY VAL ASN LEU PRO 
PRO GLU TRP VAL THR GLN GLU ILE PHE GLU 
ASP TRP GLN LEU GLU ASP PRO ASP GLY GLN 
SER LEU GLU VAL PHE ARG THR VAL ARG GLY 
GLN VAL LYS GLU ARG VAL GLU ASN LEU ILE 
ALA LYS ILE SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
