segName='   A'
seq="""
GLY ALA MET PRO SER ILE ALA SER MET ILE 
LYS GLY ASN LYS VAL VAL VAL PHE SER TRP 
VAL THR CYS PRO TYR CYS VAL ARG ALA GLU 
LYS LEU LEU HIS ALA ARG THR LYS ASP ILE 
THR VAL HIS TYR VAL ASP LYS MET SER GLU 
GLY GLU GLN LEU ARG GLY GLU ILE TYR GLN 
ALA TYR LYS HIS GLU THR VAL PRO ALA ILE 
PHE ILE ASN GLY ASN PHE ILE GLY GLY CYS 
SER ASP LEU GLU ALA LEU ASP LYS GLU GLY 
LYS LEU ASP GLY LEU LEU SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
