segName='   A'
seq="""
ASN ASN ASN LEU GLN ARG ASP ALA ILE ALA 
ALA ALA ILE ASP VAL LEU ASN GLU GLU ARG 
VAL ILE ALA TYR PRO THR GLU ALA VAL PHE 
GLY VAL GLY CYS ASP PRO ASP SER GLU THR 
ALA VAL MET ARG LEU LEU GLU LEU LYS GLN 
ARG PRO VAL ASP LYS GLY LEU ILE LEU ILE 
ALA ALA ASN TYR GLU GLN LEU LYS PRO TYR 
ILE ASP ASP THR MET LEU THR ASP VAL GLN 
ARG GLU THR ILE PHE SER ARG TRP PRO GLY 
PRO VAL THR PHE VAL PHE PRO ALA PRO ALA 
THR THR PRO ARG TRP LEU THR GLY ARG PHE 
ASP SER LEU ALA VAL ARG VAL THR ASP HIS 
PRO LEU VAL VAL ALA LEU CYS GLN ALA TYR 
GLY LYS PRO LEU VAL SER THR SER ALA ASN 
LEU SER GLY LEU PRO PRO CYS ARG THR VAL 
ASP GLU VAL ARG ALA GLN PHE GLY ALA ALA 
PHE PRO VAL VAL PRO GLY GLU THR GLY GLY 
ARG LEU ASN PRO SER GLU ILE ARG ASP ALA 
LEU THR GLY GLU LEU PHE ARG GLN GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
