segName='   A'
seq="""
SER HIS MET LYS LEU VAL LEU ALA LYS ASN 
THR ARG LYS SER ASP ALA LYS SER VAL GLU 
LEU GLU ASP LEU TYR HIS GLU PHE SER GLU 
ASP LYS ARG SER ILE PHE TYR PHE ALA PRO 
THR ASN ALA HIS LYS ASP MET LEU LYS ALA 
VAL ASP PHE PHE LYS GLU LYS GLY HIS THR 
ALA TYR LEU ASP GLU VAL ARG VAL SER THR 
ASP GLU LYS ASP PHE LEU TYR GLU LEU HIS 
ILE ILE
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
