segName='   B'
seq="""
MET ARG GLY SER HIS HIS HIS HIS HIS HIS 
GLY SER ASP LEU THR ILE SER ASN GLU LEU 
THR GLY GLU ILE TYR GLY PRO ILE GLU VAL 
SER GLU ASP MET ALA LEU THR ASP LEU ILE 
ALA LEU LEU GLN ALA ASP CYS GLY PHE ASP 
LYS THR LYS HIS ASP LEU TYR TYR ASN MET 
ASP ILE LEU ASP SER ASN ARG THR GLN SER 
LEU LYS GLU LEU GLY LEU LYS THR ASP ASP 
LEU LEU LEU ILE ARG GLY LYS ILE SER ASN 
SER LYS LEU ASN
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
